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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8226941_8230015_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8226941 - 8230015
Intron Length:
3075

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAAAT
5'SS Class:
strong_major
3'SS Sequence:
GCCTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TAGATTGTAATT
Flanking Amino Acid:
FAVLDLPAFQSIVGAEGLSL
Intron Amino Acid Position:
1153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1.1
80.7
33.7
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
85.6
0.8
0.8
83.6
31.5
Minor 5ss
40.7
-1
3
57.6
46.6
Minor BPS
47.7
-0
2
64.67
40.7

Associated Gene:

Gene:
SCAPER
Ensembl Gene ID:
ENSAPLG00000014716
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015367
8204332 - 8358959
154628