About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8241443_8251122_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8241443 - 8251122
Intron Length:
9680

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTATTTGGT
5'SS Class:
major
3'SS Sequence:
CTTTATGTCGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
CATACTTCAATC
Flanking Amino Acid:
EIKTIRFFCCINMQTMVFPS
Intron Amino Acid Position:
1007

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.4
0.36
1.1
63.7
40.5
Major BPS
75.1
0.62
1
65.6
41
Major PPT
73.7
0.53
0.9
69.1
36.6
Minor 5ss
43
-0.8
3.2
61.8
43.2
Minor BPS
53.3
0.08
1.6
60.35
39.2

Associated Gene:

Gene:
SCAPER
Ensembl Gene ID:
ENSAPLG00000014716
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015367
8204332 - 8358959
154628