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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8251381_8261319_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8251381 - 8261319
Intron Length:
9939

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CCTGATCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TTTTTCTCTACT
Flanking Amino Acid:
NLNAISRVPFKSLCNTVNAY
Intron Amino Acid Position:
921

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
72.9
0.52
0.9
69.5
36.5
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
65.8
0.58
1.9
88.18
36.7

Associated Gene:

Gene:
SCAPER
Ensembl Gene ID:
ENSAPLG00000014716
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015367
8204332 - 8358959
154628