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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8280091_8295260_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8280091 - 8295260
Intron Length:
15170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTAAAA
5'SS Class:
major
3'SS Sequence:
CTGTTTCATGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
GTTGTTTTAACT
Flanking Amino Acid:
AKKLKARMNSRLQRLAKDLF
Intron Amino Acid Position:
840

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.1
69.7
36.3
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
66.9
0.38
1.1
68.4
36.8
Minor 5ss
31.5
-2.1
3.1
39.8
45.8
Minor BPS
72.5
0.78
1.3
83.79
37.4

Associated Gene:

Gene:
SCAPER
Ensembl Gene ID:
ENSAPLG00000014716
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015367
8204332 - 8358959
154628