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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8295398_8310426_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8295398 - 8310426
Intron Length:
15029

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGTTGT
5'SS Class:
strong_major
3'SS Sequence:
ATATTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
ATTTCAATATTT
Flanking Amino Acid:
QGRELSDEEVEHLSLKKYIV
Intron Amino Acid Position:
795

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
73.2
38.4
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
83.1
0.75
0.8
78
35.6
Minor 5ss
48.1
-0.2
2.5
64.1
42.5
Minor BPS
49.6
0.05
2.1
76.84
39.5

Associated Gene:

Gene:
SCAPER
Ensembl Gene ID:
ENSAPLG00000014716
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015367
8204332 - 8358959
154628