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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8310535_8312828_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8310535 - 8312828
Intron Length:
2294

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
ATTGTCATTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TCACTAATAATT
Flanking Amino Acid:
KKQCSLCSVMISSEVYLFSH
Intron Amino Acid Position:
759

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.8
34.8
Major BPS
80
0.75
1
78.6
31
Major PPT
77.8
0.63
0.9
70.3
39.5
Minor 5ss
39.7
-1.2
2.8
46.7
43.9
Minor BPS
46.9
-0.1
1.8
64.17
40

Associated Gene:

Gene:
SCAPER
Ensembl Gene ID:
ENSAPLG00000014716
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015367
8204332 - 8358959
154628