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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8312982_8314172_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8312982 - 8314172
Intron Length:
1191

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAAAAA
5'SS Class:
major
3'SS Sequence:
ACTTTGCATTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
CTTTTGTTACTT
Flanking Amino Acid:
EELQKKIQLKHDESIRRHME
Intron Amino Acid Position:
708

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
72
32.5
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
73.9
0.54
1
70.5
39.7
Minor 5ss
38.2
-1.3
2.9
48.3
47.4
Minor BPS
49.7
0.05
2.3
74.4
43.5

Associated Gene:

Gene:
SCAPER
Ensembl Gene ID:
ENSAPLG00000014716
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015367
8204332 - 8358959
154628