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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8323933_8324393_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8323933 - 8324393
Intron Length:
461

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTAATGTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TGTTTCTTAATG
Flanking Amino Acid:
DWNDVLADYEARESWRQSNS
Intron Amino Acid Position:
457

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
88.1
28.7
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
71
0.47
1
65.6
39.9
Minor 5ss
45.1
-0.5
3.1
67
44.3
Minor BPS
77.4
0.72
1.2
75.64
36.3

Associated Gene:

Gene:
SCAPER
Ensembl Gene ID:
ENSAPLG00000014716
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015367
8204332 - 8358959
154628