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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8324470_8324962_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8324470 - 8324962
Intron Length:
493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTGAGTGTT
5'SS Class:
major
3'SS Sequence:
CATTAACTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATATCATTAACT
Flanking Amino Acid:
IETDNDSDFSASMGNGSISF
Intron Amino Acid Position:
432

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
74.7
35.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
75.5
0.57
0.9
70.7
39.5
Minor 5ss
36.1
-1.6
3.5
59
45.5
Minor BPS
76.4
0.91
1.5
89.17
34.4

Associated Gene:

Gene:
SCAPER
Ensembl Gene ID:
ENSAPLG00000014716
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015367
8204332 - 8358959
154628