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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8325134_8326696_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8325134 - 8326696
Intron Length:
1563

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
GTTTCCTATACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
GTTTCCTATACA
Flanking Amino Acid:
TEMDPSDISNSMAEVLAKKE
Intron Amino Acid Position:
375

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
77
31.3
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
79.2
0.66
0.9
73.3
36.3
Minor 5ss
32.3
-2
3.3
46.1
42.2
Minor BPS
61.8
0.36
2
76.35
40.5

Associated Gene:

Gene:
SCAPER
Ensembl Gene ID:
ENSAPLG00000014716
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015367
8204332 - 8358959
154628