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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8332666_8335167_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8332666 - 8335167
Intron Length:
2502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGAAAA
5'SS Class:
major
3'SS Sequence:
GACTTCCATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
ATAGCTATGACT
Flanking Amino Acid:
TSNARRSLNFGNPSVTISAT
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1
69.6
36.5
Major BPS
76.8
0.67
1
66
40.9
Major PPT
66.3
0.37
0.9
63.3
38.3
Minor 5ss
38.4
-1.3
2.8
40.2
45.6
Minor BPS
51.7
0.14
1.7
70.89
40.1

Associated Gene:

Gene:
SCAPER
Ensembl Gene ID:
ENSAPLG00000014716
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015367
8204332 - 8358959
154628