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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8335285_8336389_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8335285 - 8336389
Intron Length:
1105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGAGA
5'SS Class:
major
3'SS Sequence:
CCTGAATTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTATTTTTAACC
Flanking Amino Acid:
EKLEKADAQSRPTSLAWEVK
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.5
39.9
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
73.2
0.52
1
65.4
39.8
Minor 5ss
31.7
-2.1
3.1
40.5
45.2
Minor BPS
79.9
0.92
1
82.59
30.6

Associated Gene:

Gene:
SCAPER
Ensembl Gene ID:
ENSAPLG00000014716
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015367
8204332 - 8358959
154628