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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8345716_8349893_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8345716 - 8349893
Intron Length:
4178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCTGCT
5'SS Class:
major
3'SS Sequence:
CTTGTTTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TCCTTTGTATCT
Flanking Amino Acid:
TQGTHKTAKQNTTIDCKLTA
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1.2
71.5
38.6
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
82.6
0.73
0.7
81.3
30.8
Minor 5ss
47
-0.3
2.9
68.1
42.9
Minor BPS
46.5
-0.1
2.2
66.05
45.6

Associated Gene:

Gene:
SCAPER
Ensembl Gene ID:
ENSAPLG00000014716
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015367
8204332 - 8358959
154628