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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8349965_8358553_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8349965 - 8358553
Intron Length:
8589

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
GCTTCTCCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTATTTTTGATG
Flanking Amino Acid:
SVPLENKDDDGKSKWQAGGK
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
92.6
23.1
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
71.1
0.48
0.8
65.3
30.6
Minor 5ss
41.8
-0.9
2.9
57.3
41.2
Minor BPS
64
0.29
1.3
65.91
36.4

Associated Gene:

Gene:
SCAPER
Ensembl Gene ID:
ENSAPLG00000014716
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015367
8204332 - 8358959
154628