About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8368718_8371110_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8368718 - 8371110
Intron Length:
2393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATGT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTTCTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTAAGC
Flanking Amino Acid:
EDQEEESFRQLHLKEKKRFE
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
74.9
36.1
Major BPS
100
1.24
0.5
100
0
Major PPT
73.6
0.53
1
78.5
33.7
Minor 5ss
39
-1.2
3.2
56.6
47.5
Minor BPS
70.2
0.61
1.9
83.79
35.6

Associated Gene:

Gene:
RCN2
Ensembl Gene ID:
ENSAPLG00000014965
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015636
8368521 - 8377869
9349