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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8371225_8372467_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
8371225 - 8372467
Intron Length:
1243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
ATGTATGCAAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
TTGTTTGTATGT
Flanking Amino Acid:
EHPEEVEYMTDFVIQEALEE
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
81.9
32.3
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
50.2
0
1.2
50.1
42.3
Minor 5ss
44.4
-0.6
3.2
66.3
44.6
Minor BPS
43.6
-0.4
2.3
66.16
45.4

Associated Gene:

Gene:
RCN2
Ensembl Gene ID:
ENSAPLG00000014965
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015636
8368521 - 8377869
9349