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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8372565_8374805_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8372565 - 8374805
Intron Length:
2241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTTACTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTTTCTTACTA
Flanking Amino Acid:
EFLGDYRRDPTAREDPEWIL
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
77.7
32
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
76.5
0.6
0.9
71.1
39.6
Minor 5ss
33.3
-1.9
3.2
39.8
40.3
Minor BPS
66.9
0.53
1.6
75.34
36.5

Associated Gene:

Gene:
RCN2
Ensembl Gene ID:
ENSAPLG00000014965
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015636
8368521 - 8377869
9349