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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8389927_8407124_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8389927 - 8407124
Intron Length:
17198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAG
U12 Branch Point Sequence:
ACGATCTCAGCT
Flanking Amino Acid:
MRFGARSSPFTLA
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1
72.3
39.5
Major BPS
62.2
0.3
1.5
71.4
36.6
Major PPT
87
0.83
0.7
84.9
29.9
Minor 5ss
31.6
-2.1
3.1
31.9
42.5
Minor BPS
46.1
-0.2
1.8
58.92
44.2

Associated Gene:

Gene:
PSTPIP1
Ensembl Gene ID:
ENSAPLG00000015226
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015881
8389689 - 8442553
52865
ENSAPLT00000044835
8389894 - 8432264
42371
ENSAPLT00000043512
8389689 - 8443827
54139
ENSAPLT00000040676
8389894 - 8442553
52660