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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8395770_8460670_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8395770 - 8460670
Intron Length:
64901

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TTTGATTCCACC
Flanking Amino Acid:
WAALAFAAIQELIRTKLRAA
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
83.2
30.8
Major BPS
84
0.85
0.9
75
39.9
Major PPT
89.2
0.88
0.6
88.7
20.6
Minor 5ss
38.7
-1.3
2.8
48.1
47.6
Minor BPS
45.1
-0.4
2.2
63.11
42.7

Associated Gene:

Gene:
TSPAN3
Ensembl Gene ID:
ENSAPLG00000015397
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036637
8395731 - 8478239
82509