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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8410042_8421250_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8410042 - 8421250
Intron Length:
11209

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAA
U12 Branch Point Sequence:
CCTATGTTAACA
Flanking Amino Acid:
ARKAGGQTEINTLKAAFERL
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
80.7
33.7
Major BPS
61.8
0.29
1.1
69.7
35.6
Major PPT
85.4
0.8
0.8
80.1
32
Minor 5ss
42.8
-0.8
2.9
58
40.7
Minor BPS
50.4
0.01
2.1
62.91
43.8

Associated Gene:

Gene:
PSTPIP1
Ensembl Gene ID:
ENSAPLG00000015226
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044835
8389894 - 8432264
42371
ENSAPLT00000043512
8389689 - 8443827
54139
ENSAPLT00000040676
8389894 - 8442553
52660