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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8421286_8422710_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8421286 - 8422710
Intron Length:
1425

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGATCTGCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TACATATCAATT
Flanking Amino Acid:
LKAAFERLKQQIESVGNSHI
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1.2
90.9
28.7
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
69.3
0.44
0.9
66.6
40.4
Minor 5ss
43
-0.8
2.9
59.7
38
Minor BPS
47
-0.1
1.8
63.07
41.1

Associated Gene:

Gene:
PSTPIP1
Ensembl Gene ID:
ENSAPLG00000015226
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044835
8389894 - 8432264
42371
ENSAPLT00000043512
8389689 - 8443827
54139
ENSAPLT00000040676
8389894 - 8442553
52660