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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8424819_8425920_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8424819 - 8425920
Intron Length:
1102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCAAG
5'SS Class:
strong_major
3'SS Sequence:
CATTTCAACACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TATTCCCTACCC
Flanking Amino Acid:
KLSHYKKTMESKKTYEQKCK
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.9
77.9
38.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
68.7
0.42
1
62.5
37.3
Minor 5ss
38.7
-1.3
2.8
47.8
47.9
Minor BPS
61.4
0.34
2
76.58
39.2

Associated Gene:

Gene:
PSTPIP1
Ensembl Gene ID:
ENSAPLG00000015226
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044835
8389894 - 8432264
42371
ENSAPLT00000043512
8389689 - 8443827
54139
ENSAPLT00000015881
8389689 - 8442553
52865