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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8426020_8427901_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8426020 - 8427901
Intron Length:
1882

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCTTTG
5'SS Class:
major
3'SS Sequence:
CTTCCTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AGCAATTAATTT
Flanking Amino Acid:
ASGNQKQTEKSQNKAKQCRD
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.2
69.9
43.4
Major BPS
83
0.82
0.8
82
24.9
Major PPT
82.7
0.73
0.8
80.1
31.9
Minor 5ss
48.3
-0.2
2.8
67
44.3
Minor BPS
38.9
-0.7
1.8
48.2
38.9

Associated Gene:

Gene:
PSTPIP1
Ensembl Gene ID:
ENSAPLG00000015226
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044835
8389894 - 8432264
42371
ENSAPLT00000043512
8389689 - 8443827
54139
ENSAPLT00000040676
8389894 - 8442553
52660
ENSAPLT00000015881
8389689 - 8442553
52865