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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8427948_8432241_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8427948 - 8432241
Intron Length:
4294

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATACTC
5'SS Class:
major
3'SS Sequence:
TCTTCGGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
GCTACCTCACGT
Flanking Amino Acid:
KQCRDAANEAGLPAPGV*
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
67.8
37.3
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
75.8
0.58
0.9
69.1
37
Minor 5ss
31.1
-2.2
3.2
42.2
44.6
Minor BPS
44.8
-0.3
2.1
61.54
47.7

Associated Gene:

Gene:
PSTPIP1
Ensembl Gene ID:
ENSAPLG00000015226
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044835
8389894 - 8432264
42371