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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8433150_8436180_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8433150 - 8436180
Intron Length:
3031

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTATT
5'SS Class:
strong_major
3'SS Sequence:
TGCCCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTGAA
U12 Branch Point Sequence:
TTTGCCTGATTG
Flanking Amino Acid:
KTKMTGTQPPGAIGYENYYS
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
92.8
22.7
Major BPS
61.6
0.29
1.2
55.4
42
Major PPT
81.6
0.71
0.8
76
32.5
Minor 5ss
41.7
-0.9
2.9
60.3
44.1
Minor BPS
52.3
-0
1.9
63.99
44.3

Associated Gene:

Gene:
PSTPIP1
Ensembl Gene ID:
ENSAPLG00000015226
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015881
8389689 - 8442553
52865
ENSAPLT00000043512
8389689 - 8443827
54139
ENSAPLT00000040676
8389894 - 8442553
52660