About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_84358_85880_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
84358 - 85880
Intron Length:
1523

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
GATGACAAAACT
Flanking Amino Acid:
WNHEETSSIPGPGYCMGIGP
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
73.5
33.5
Major BPS
71.2
0.53
1
61
37.5
Major PPT
88.3
0.86
0.6
89.2
19.7
Minor 5ss
42.5
-0.8
3
55.3
48.9
Minor BPS
44.4
-0.3
2.1
64.13
45.3

Associated Gene:

Gene:
CYP19A1
Ensembl Gene ID:
ENSAPLG00000007655
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007995
68677 - 93897
25221