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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8436266_8437828_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8436266 - 8437828
Intron Length:
1563

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCGGT
5'SS Class:
strong_major
3'SS Sequence:
CTTGGCTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TGTTCACTCACT
Flanking Amino Acid:
SPTQSCGMMKRFSGLLHGSS
Intron Amino Acid Position:
288

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
72.2
39.5
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
76.6
0.6
0.9
69.5
36.8
Minor 5ss
32.6
-2
3.4
46.8
48.5
Minor BPS
49.6
0.05
2.3
79.08
42.4

Associated Gene:

Gene:
PSTPIP1
Ensembl Gene ID:
ENSAPLG00000015226
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043512
8389689 - 8443827
54139
ENSAPLT00000040676
8389894 - 8442553
52660
ENSAPLT00000015881
8389689 - 8442553
52865