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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8437900_8440612_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8437900 - 8440612
Intron Length:
2713

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGCCTC
5'SS Class:
major
3'SS Sequence:
TTTTCCCCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TTTTCCCCAACA
Flanking Amino Acid:
ESITPSAPPLEKADGVYASI
Intron Amino Acid Position:
312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
61.5
43.2
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
79.1
0.65
0.8
74.7
29
Minor 5ss
48.7
-0.1
2.8
64.9
40.9
Minor BPS
68.3
0.57
1.9
84.96
34.3

Associated Gene:

Gene:
PSTPIP1
Ensembl Gene ID:
ENSAPLG00000015226
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040676
8389894 - 8442553
52660
ENSAPLT00000015881
8389689 - 8442553
52865
ENSAPLT00000043512
8389689 - 8443827
54139