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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8459782_8460670_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8459782 - 8460670
Intron Length:
889

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
ATGCCCTTAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATGCCCTTAATA
Flanking Amino Acid:
WAALAFAAIQHLNSENIVPV
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
83.2
30.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
64
0.32
0.9
59
36.4
Minor 5ss
38.7
-1.3
2.8
48.1
47.6
Minor BPS
74.5
0.76
1.2
75.39
35.9

Associated Gene:

Gene:
TSPAN3
Ensembl Gene ID:
ENSAPLG00000015397
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030516
8459727 - 8478239
18513