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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8462354_8465436_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8462354 - 8465436
Intron Length:
3083

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAACC
5'SS Class:
strong_major
3'SS Sequence:
TAATGCTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
GCTTTGCTAATG
Flanking Amino Acid:
VVLGYIYRAKVEDEVDHSIQ
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
74.4
33.9
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
76.7
0.6
1
69.8
40.9
Minor 5ss
34.8
-1.7
2.9
45
42.5
Minor BPS
44.3
-0.5
2.3
51.83
43.3

Associated Gene:

Gene:
TSPAN3
Ensembl Gene ID:
ENSAPLG00000015397
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016061
8405774 - 8474206
68433
ENSAPLT00000036637
8395731 - 8478239
82509
ENSAPLT00000030516
8459727 - 8478239
18513
ENSAPLT00000028835
8405774 - 8478239
72466
ENSAPLT00000019362
8455413 - 8478239
22827