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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8465512_8466532_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8465512 - 8466532
Intron Length:
1021

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTGC
5'SS Class:
major
3'SS Sequence:
TTGTATTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATTAT
U12 Branch Point Sequence:
ATTTGCATAAAT
Flanking Amino Acid:
IRESRCGLATFVIILLLVFI
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
67.3
39.4
Major BPS
68.1
0.45
1
58.1
38.5
Major PPT
85.7
0.8
0.8
80.1
37.1
Minor 5ss
42.7
-0.8
2.8
58.3
40.4
Minor BPS
55.5
0.25
2.1
81
40.1

Associated Gene:

Gene:
TSPAN3
Ensembl Gene ID:
ENSAPLG00000015397
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030516
8459727 - 8478239
18513
ENSAPLT00000028835
8405774 - 8478239
72466
ENSAPLT00000019362
8455413 - 8478239
22827
ENSAPLT00000016061
8405774 - 8474206
68433
ENSAPLT00000036637
8395731 - 8478239
82509