Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8502343_8504332_R

Intron Information:

Intron Rank:

144709

Intron Class:

major

Intron Phase:

Intron Coordinates:

8502343 - 8504332

Intron Length:

1990

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGTTGA

5'SS Class:

strong_major

3'SS Sequence:

TGCTGTTTTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GCCTCAA

U12 Branch Point Sequence:

GCTGCCTCAAGC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.2

0.97

0.8

80.2

30.7

Major BPS

55.4

0.13

1.2

59.5

Major PPT

81.8

0.72

0.9

75.5

38.4

Minor 5ss

34.1

-1.8

2.8

40.8

45.4

Minor BPS

48.9

-0.1

59.01

45.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025212

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029089

8501982 - 8505147

3166