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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8502389_8502485_R

Intron Information:

Intron Rank:
144710
Intron Class:
major
Intron Phase:
Intron Coordinates:
8502389 - 8502485
Intron Length:
97

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
CTGTGTTCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
CCAGTCTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
85.9
23.9
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
70.7
0.47
1
65.7
39.9
Minor 5ss
29.7
-2.3
3
39.4
46.1
Minor BPS
64.6
0.54
1.5
71.66
45.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025212
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035308
8501982 - 8502976
995