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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8521484_8530485_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8521484 - 8530485
Intron Length:
9002

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TCTCATTACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTCATTACAC
Flanking Amino Acid:
NPCSATYSNLGQSRAAMIPP
Intron Amino Acid Position:
1117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.5
1.12
0.6
90.6
20.3
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
73.7
0.53
0.9
68.4
36.1
Minor 5ss
36.3
-1.6
3.3
49
47.2
Minor BPS
52.5
0.06
2
68.75
42.5

Associated Gene:

Gene:
PEAK1
Ensembl Gene ID:
ENSAPLG00000015599
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027036
8510643 - 8600820
90178
ENSAPLT00000025700
8509979 - 8542520
32542
ENSAPLT00000039559
8510365 - 8617636
107272
ENSAPLT00000017175
8509365 - 8542408
33044
ENSAPLT00000035973
8509979 - 8594104
84126
ENSAPLT00000016253
8510979 - 8594104
83126
ENSAPLT00000033764
8510643 - 8600820
90178