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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8530683_8532607_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8530683 - 8532607
Intron Length:
1925

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTGTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TAGCTTTGATCT
Flanking Amino Acid:
LMGNCVSEYSGQVPDDTTLE
Intron Amino Acid Position:
1090

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
74.8
38.1
Major BPS
84
0.85
0.9
75
39.9
Major PPT
86.1
0.81
0.9
84.6
36
Minor 5ss
36
-1.6
2.9
40.9
45.4
Minor BPS
47.2
-0.1
1.7
62.94
41.2

Associated Gene:

Gene:
PEAK1
Ensembl Gene ID:
ENSAPLG00000015599
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033764
8510643 - 8600820
90178
ENSAPLT00000027036
8510643 - 8600820
90178
ENSAPLT00000025700
8509979 - 8542520
32542
ENSAPLT00000017175
8509365 - 8542408
33044
ENSAPLT00000039559
8510365 - 8617636
107272