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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8532725_8539256_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
8532725 - 8539256
Intron Length:
6532

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCCGC
5'SS Class:
major
3'SS Sequence:
GCACAACTTGTAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGCTTAC
U12 Branch Point Sequence:
GCTTGCACAACT
Flanking Amino Acid:
SPPLIPKKIPSTSEHCGING
Intron Amino Acid Position:
1051

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
59.9
45.1
Major BPS
66.4
0.41
1.1
57.4
41.4
Major PPT
59.8
0.22
1
51.4
37.7
Minor 5ss
38.3
-1.3
3
51.6
45
Minor BPS
47.4
-0.1
2.2
70.09
46.2

Associated Gene:

Gene:
PEAK1
Ensembl Gene ID:
ENSAPLG00000015599
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027036
8510643 - 8600820
90178
ENSAPLT00000025700
8509979 - 8542520
32542
ENSAPLT00000017175
8509365 - 8542408
33044
ENSAPLT00000039559
8510365 - 8617636
107272
ENSAPLT00000033764
8510643 - 8600820
90178