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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8593346_8594034_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
8593346 - 8594034
Intron Length:
689

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTATGTGCA
5'SS Class:
major
3'SS Sequence:
TTTTCTACTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TTTTCTACTACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
68.1
37
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
87
0.83
0.7
81.6
28.9
Minor 5ss
39.5
-1.2
3.1
50.4
46
Minor BPS
49.4
-0
2.1
72.75
38.7

Associated Gene:

Gene:
PEAK1
Ensembl Gene ID:
ENSAPLG00000015599
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016253
8510979 - 8594104
83126