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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8594105_8600587_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
8594105 - 8600587
Intron Length:
6483

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTGC
5'SS Class:
strong_major
3'SS Sequence:
TATCTGATTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
CATTTCCTATCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
73.2
39.3
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
78
0.63
0.9
74.2
39.9
Minor 5ss
44.2
-0.6
2.9
59.3
45.5
Minor BPS
52.2
0.15
2
73.36
43.4

Associated Gene:

Gene:
PEAK1
Ensembl Gene ID:
ENSAPLG00000015599
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033764
8510643 - 8600820
90178