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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_86046_93297_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
86046 - 93297
Intron Length:
7252

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTATCTAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TTCTCTCTATCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
89.8
23.7
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
71.3
0.48
1
71.4
32.4
Minor 5ss
46.2
-0.4
2.8
67.4
43.6
Minor BPS
57.8
0.32
2
80.25
42

Associated Gene:

Gene:
CYP19A1
Ensembl Gene ID:
ENSAPLG00000007655
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007995
68677 - 93897
25221