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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8626850_8642278_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
8626850 - 8642278
Intron Length:
15429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGACGA
5'SS Class:
major
3'SS Sequence:
TTTTTTTAACCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.4
0.41
1.1
55.9
43
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
82.9
0.74
0.9
78.8
38.7
Minor 5ss
34.2
-1.8
3.2
49.3
46.3
Minor BPS
85.8
1.1
0.9
89.58
24.4

Associated Gene:

Gene:
HMG20A
Ensembl Gene ID:
ENSAPLG00000015603
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023398
8626624 - 8658917
32294