Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8642372_8644371_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8642372 - 8644371

Intron Length:

2000

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAGTGAC

5'SS Class:

strong_major

3'SS Sequence:

TGTGCTTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATATGAT

U12 Branch Point Sequence:

TTTGCTATCATG

Flanking Amino Acid:

SKEGSDITVTGVAHSESSFT

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.2

0.85

0.9

75.8

34.3

Major BPS

75.8

0.64

65.8

Major PPT

83.6

0.76

0.8

80.8

36.8

Minor 5ss

32.5

-2

3.1

35.2

41.4

Minor BPS

46.3

-0.4

2.1

59.42

43.3

Associated Gene:

Gene:

HMG20A

Ensembl Gene ID:

ENSAPLG00000015603

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023398

8626624 - 8658917

32294

ENSAPLT00000016280

8630270 - 8656469

26200