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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8644226_8644371_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8644226 - 8644371
Intron Length:
146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTGCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
TTTGCTATCATG
Flanking Amino Acid:
VAWMEHPVLLKVAHSESSFT
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.8
86.7
22.9
Major BPS
75.8
0.64
1
65.8
41
Major PPT
83.6
0.76
0.8
80.8
36.8
Minor 5ss
42.4
-0.8
3
58.5
40.4
Minor BPS
46.3
-0.4
2.1
59.42
43.3

Associated Gene:

Gene:
HMG20A
Ensembl Gene ID:
ENSAPLG00000015603
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021378
8643808 - 8653972
10165