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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8644520_8645849_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8644520 - 8645849
Intron Length:
1330

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTCTTCCATT
Flanking Amino Acid:
ENTEQKPEEEQQRTKRGGWA
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
76.3
30.6
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
92.2
0.95
0.6
88.1
21.7
Minor 5ss
37.7
-1.4
3
46.2
49.1
Minor BPS
59.7
0.39
2
83.73
37.9

Associated Gene:

Gene:
HMG20A
Ensembl Gene ID:
ENSAPLG00000015603
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023398
8626624 - 8658917
32294
ENSAPLT00000021378
8643808 - 8653972
10165
ENSAPLT00000016280
8630270 - 8656469
26200