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Intron Name: Anas_platyrhynchos_platyrhynchos_11_8649006_8652076_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8649006 - 8652076

Intron Length:

3071

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAACCTC

5'SS Class:

major

3'SS Sequence:

CTCTTCTTTGTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTCAG

U12 Branch Point Sequence:

GTATTCAGAAAT

Flanking Amino Acid:

GARQPVHDHEKEADTKERSV

Intron Amino Acid Position:

218

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.6

0.7

69.5

41.5

Major BPS

68.2

0.45

1.5

77.7

37.1

Major PPT

84.3

0.77

0.7

80.4

24.9

Minor 5ss

41.8

-0.9

3.2

59.1

45.6

Minor BPS

48.6

-0

1.8

69.15

40.6

Associated Gene:

Gene:

HMG20A

Ensembl Gene ID:

ENSAPLG00000015603

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023398

8626624 - 8658917

32294

ENSAPLT00000021378

8643808 - 8653972

10165

ENSAPLT00000016280

8630270 - 8656469

26200