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Intron Name: Anas_platyrhynchos_platyrhynchos_11_8652153_8652984_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8652153 - 8652984

Intron Length:

832

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACGTTAA

5'SS Class:

strong_major

3'SS Sequence:

TTGATATTCACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAG

U12 Branch Point Sequence:

TTAGCTTTGACT

Flanking Amino Acid:

FTEEFLNHSKAREAELRQLR

Intron Amino Acid Position:

243

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.4

0.88

0.9

80.4

30.1

Major BPS

72.5

0.56

1.5

71.7

44.6

Major PPT

75.3

0.57

0.9

69.1

40.9

Minor 5ss

38.4

-1.3

49.1

47.1

Minor BPS

71.4

0.76

1.3

83.55

37.7

Associated Gene:

Gene:

HMG20A

Ensembl Gene ID:

ENSAPLG00000015603

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016280

8630270 - 8656469

26200

ENSAPLT00000023398

8626624 - 8658917

32294

ENSAPLT00000021378

8643808 - 8653972

10165