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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8717527_8723672_F

Intron Information:

Intron Rank:
136369
Intron Class:
major
Intron Phase:
Intron Coordinates:
8717527 - 8723672
Intron Length:
6146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTGA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTACTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TATTCCTTTACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.93
0.9
75.7
36.7
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
82.4
0.73
0.8
73.5
36
Minor 5ss
36.1
-1.6
3.3
47.1
48.3
Minor BPS
81
1.06
1.5
93.58
34

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023485
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047150
8716665 - 8724560
7896
ENSAPLT00000046372
8714792 - 8724560
9769