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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8750368_8774606_F

Intron Information:

Intron Rank:
149264
Intron Class:
major
Intron Phase:
Intron Coordinates:
8750368 - 8774606
Intron Length:
24239

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATTGGC
5'SS Class:
major
3'SS Sequence:
TATTTTTTTAAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTCCTATTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
68.5
36.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81
0.7
1
82.5
32.7
Minor 5ss
27.7
-2.6
3
35.3
41.2
Minor BPS
66.5
0.6
1.6
82.31
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030266
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036928
8749492 - 8801232
51741