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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8763038_8774606_F

Intron Information:

Intron Rank:
149266
Intron Class:
major
Intron Phase:
Intron Coordinates:
8763038 - 8774606
Intron Length:
11569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTTTAAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTCCTATTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.85
0.9
76.4
39.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81
0.7
1
82.5
32.7
Minor 5ss
35.2
-1.7
3.5
48.8
47.4
Minor BPS
66.5
0.6
1.6
82.31
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030266
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047729
8763008 - 8803400
40393