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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8807803_8807841_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
8807803 - 8807841
Intron Length:
39

Sequence Information:

Terminal Dinucleotides:
GT-AA
5'SS Sequence:
CAA|GTCTGACGC
5'SS Class:
weak_major
3'SS Sequence:
ATGCACCGCGCAA|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
CTCTGCTGATGC
Flanking Amino Acid:
HNIEIEYVPRKFNMKMI*
Intron Amino Acid Position:
594

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.9
0.12
1.3
47.1
41.8
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
35.6
-0.8
3.1
43.3
37.7
Minor 5ss
35.5
-1.6
3
43.1
38
Minor BPS
40.8
-0.7
2.2
50.27
46.5

Associated Gene:

Gene:
LINGO1
Ensembl Gene ID:
ENSAPLG00000011471
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023887
8807781 - 8820665
12885
ENSAPLT00000023582
8807781 - 8821349
13569
ENSAPLT00000011934
8807781 - 8852831
45051