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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_8849183_8852672_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
8849183 - 8852672
Intron Length:
3490

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAGGTCCT
5'SS Class:
major
3'SS Sequence:
GTTTCCCCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTAAT
U12 Branch Point Sequence:
AAAGCCCTAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.1
66.6
44.7
Major BPS
69.6
0.49
1.1
69.5
34
Major PPT
76.3
0.59
0.8
69.5
31.3
Minor 5ss
35.9
-1.6
3.3
51.6
44.8
Minor BPS
54.3
0.21
1.8
69.47
41.2

Associated Gene:

Gene:
LINGO1
Ensembl Gene ID:
ENSAPLG00000011471
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011934
8807781 - 8852831
45051